AlphaFold Protein Structure Agent

The AlphaFold Agent provides access to DeepMind's AlphaFold Database of over 200 million AI-predicted protein structures for structural biologists, drug discovery researchers, and protein engineers. Retrieve structures by UniProt ID, analyze confidence metrics (pLDDT, PAE), and download coordinate files for computational workflows. **Key Capabilities:** - Structure retrieval by UniProt accession - PDB/mmCIF coordinate file downloads - Confidence metric analysis (pLDDT, PAE) - Bulk proteome dataset access via Google Cloud - Structure parsing and analysis **Database Connections:** - AlphaFold Database (REST API) - 200M+ AI-predicted protein structures — alphafold.ebi.ac.uk - Structure Downloader (Python) - Retrieve PDB/mmCIF coordinate files — Biopython - Confidence Analyzer (Python) - Evaluate prediction quality (pLDDT, PAE scores) - Proteome Browser (Cloud) - Access bulk datasets for complete organisms — Google Cloud Storage